NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255343_1000045

Scaffold Ga0255343_1000045


Overview

Basic Information
Taxon OID3300028561 Open in IMG/M
Scaffold IDGa0255343_1000045 Open in IMG/M
Source Dataset NameWastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)219173
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)170 (81.34%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: Vancouver, British Columbia
CoordinatesLat. (o)49.1150727Long. (o)-123.147Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079956Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0255343_1000045183F079956AGGAMNAKGIAYIVTKSNMVAAFGEEKWTAFLQKLAKKDSYFSTVILSITPMPVEKLIVCFDEMCAEFFNNDKMQYTSFGKAGAKAVLSPTGPYKTFMLMTKDMKQFVESVLPKVWSTYFDSGVAVAKLEDNVAHIKITGVEIRYTYFEYLVMGYFQQAIKMFGKQSSAKRIRSLAAGDKDMYFQYVLKDS
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