NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302151_10000025

Scaffold Ga0302151_10000025


Overview

Basic Information
Taxon OID3300028562 Open in IMG/M
Scaffold IDGa0302151_10000025 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82952
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028856Metagenome / Metatranscriptome190Y
F035339Metagenome / Metatranscriptome172Y
F060114Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0302151_1000002538F035339N/AMPTTGAELTRAQLRRDRVRIWCWLPVGGLAMYLVVKAWQFAAGDPPQALYTVLDVAWIAVTFALISRRSTSRCPKCDHRWLRAFPWMSLKKVACGVCGHEMPEG
Ga0302151_1000002547F028856GGAGGMDHFSAGHAHDANLEAGMLPDIAAPFDSFHADDNLGDEAPFPSTWQLLASGDAPND
Ga0302151_1000002557F060114N/AMTSPLADLFENQRVENARLSGQIVALEMAVKLLFIQHPNPTGLAAVYTKAIDELLDITLATRMPEEMRDSLDQARNGILEALLTQPKA
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