NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302145_10333735

Scaffold Ga0302145_10333735


Overview

Basic Information
Taxon OID3300028565 Open in IMG/M
Scaffold IDGa0302145_10333735 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028288Metagenome / Metatranscriptome192Y
F064942Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0302145_103337351F064942N/AGTVSGDTWTWLGESTLAGKAYHTRYIMKFVSKDSYEYTDEAGESENSMKVFVSGKETRVATTKPATSQAKQ
Ga0302145_103337352F028288N/AMRIRRTFPIVLAVVAIAAAVTLAVQLRKHAPPEPARLLPGADAF

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