NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302147_10008169

Scaffold Ga0302147_10008169


Overview

Basic Information
Taxon OID3300028566 Open in IMG/M
Scaffold IDGa0302147_10008169 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4043
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033778Metagenome176Y
F056860Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0302147_100081691F056860N/ARQSRPMPIDIQKLIGEVAARNHCRIEASDPIFAVSTINRLMLDEVVEGLILRVGAAITAFETSARAVDAHAGKLLAEEIRTSTSAWKAEVARDINIANVRSCEMIDKLNMAHSKPAMIRWGSLGLVAGLLLLIGGVFLGRYVR
Ga0302147_100081696F033778N/ASLVPIYLNDTDDNGEIIFHGWIDAVVPVQDKLRALSRRVLGDVWRVSELTDLTIHHLWHRHRENIGCYPSFNVYRTAKRTAHRLEDPGGREHLALNLSLDDLDGYRRDAIIGDTADTEGEYGMTLDLERVEGRLKKMAKRDELEVYMMIRAGYHWYEIGERLGENPNTVYRRFRRMLQRISDFV
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