Scaffold Ga0255342

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255342_1319813

Overview

Basic Information
Taxon OID	3300028567 Open in IMG/M
Scaffold ID	Ga0255342_1319813 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	559
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: Vancouver, British Columbia
Coordinates	Lat. (^o)	49.1150727	Long. (^o)	-123.147	Alt. (m)	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066564	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255342_13198132	F066564	AGGAG	MKTTLNLESKEKLDCNDIKNLLQKHLTAIDSITVKQVSNISADNGITYVVKVLSDCDSKVLLSQLYNVSRVLDQDCIAYSSSDSVLGRGFIGIKPYSVFDDNLFIDYDSLKPLATVKGER

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