NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1008782

Scaffold Ga0247843_1008782


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1008782 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)11582
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.71%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F005775Metagenome390N
F006697Metagenome / Metatranscriptome366Y
F008615Metagenome / Metatranscriptome330N
F025444Metagenome201N
F042709Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0247843_10087821F005775N/AMAKQRPIYTKAQHQIVTPSFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNAGKLDQVVTKELDSYQTYHLKNLLNTNEPR
Ga0247843_100878215F000710N/AMASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNALQLRVTLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGVSQLLNATVYYKNEI
Ga0247843_100878216F006697N/AMANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAVAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQIIMNSATSNIADHLNLNITVGNQVVLKDFDPSFNATSRGLSFDRLHSGFTSSTNLEVRLLTEIVIPPQVNFKAELQLSNALIAVDDDVTIIFKGYGRIFSAGNSF
Ga0247843_100878217F002259N/AMGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSNATASVNHTFFKGAAQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPGAADGISYFGLTTGQASVKFDLVIGNKTVIKDATVELGGEQAFYNDGTIASSVIDLEGVGILIPPQVEYYVIAKSFLAADRIASSTRLGCYLFGTGALLNFNTTI
Ga0247843_100878219F042709GAGGMNPLVLVGAVALFFLLRKKPPVVDNTTPDVVPFTASNVNAYKNLNTTSTFDNRLAKEARRVTPDGTGKNIVDGSYKCFAPGNQSRRAAIIKVYEDLDRLQTQINNSTGERREEYRKDRREKDDERAILVAEHYMICEAFFEELKKKGATPQQTTITTAQQTRSAL
Ga0247843_100878220F025444N/AMYLQLAGPSPLDTAENPLAPGAPTYKYKDFYLGQGQDIILPDALFPANVEGYAKALKDLEGLYNKYAKGIKKKITDKGMGAISFAVIMGTLQAIGAGFQALSTVARSAQINIARQRITELYNNNTFNVQNLNRLTPTQLSNAMTQIDEQINMTPRTQFGRQMALARFRLVYQQRFDQVAGGGGIGNLPGWVLPAALGLGAFLLLRGRK
Ga0247843_100878222F005775N/AMKKQRPIYTKAQHQIVTPAYVEKKIQMHKNIKWTTKDGRDLFLMASASVTRYVAKSEHNDQAPMGFYNMQMGHYNKISIHTRDFRQLADVLLQAHLFLLNNADKLDQVVTKELDTYTTYHLKNLLDTNEQP
Ga0247843_10087823F008615N/AMNAPDTFGAKMFGRFIKKGWHISFTDSYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDTERFAAFAAWIGDLLRNPEKFT
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