NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302152_10083199

Scaffold Ga0302152_10083199


Overview

Basic Information
Taxon OID3300028572 Open in IMG/M
Scaffold IDGa0302152_10083199 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F042119Metagenome158N
F080768Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0302152_100831991F080768GGAGMLGHRLNPTIHRYEDVELIEVHSEHLECSFMVAKDEWETGKKLLNIFSPIDG
Ga0302152_100831992F042119GAGMETIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWLTIALSNDGARAYRLCPLRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQEFVLCGPEVKIVASQHEDVFVPQVQLALF
Ga0302152_100831993F003764N/ALDSPYAHDENPAALLTGAEIEAAGLHRCLKIVRLWSQSSTLPRLRRKEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIETACILDDWECPPAEQGLLFPIPNYSATEANPAMAKK
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