NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304731_10985382

Scaffold Ga0304731_10985382


Overview

Basic Information
Taxon OID3300028575 Open in IMG/M
Scaffold IDGa0304731_10985382 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)799
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)18.7998Long. (o)-20.70285Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001154Metatranscriptome763Y
F064647Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0304731_109853821F064647N/AMAGDLSFSDLLLSPEADDELQEAFQSFSGGKEEVEEKQLGDILAGMGISPTKEELDDMLDRAGDGNGKIHFNGFKKMISTRATTSKDETELMSALTYFATDGAIDTNAMCGAILAFCAPTADKVLPSFAPTPSTLVQLGLRG
Ga0304731_109853822F001154N/AMKVTIGKIEDPWCEIDLTDEDVEDWKKGVDITEEKLKEVIQLPPITIENCHEREDGDLQWDEITFEEEVGGKYWHAVIMALHRIREDFVKKQRKMKHLDWYLTMKRSSDK
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