NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272482_10022532

Scaffold Ga0272482_10022532


Overview

Basic Information
Taxon OID3300028578 Open in IMG/M
Scaffold IDGa0272482_10022532 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1590
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042771Metagenome157N
F043687Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0272482_100225321F042771AGGAMYSQRQEDLALFSSHLEAKKAGPLVCPICNQTNTIVPKGAPIGELSGEPVIESEPQFAYAACTNCGYSIFFDIDYLPERRSS
Ga0272482_100225322F043687AGGCGGMTRGTVKDNVRDELDEAAGRGRRDREDRKEAAPEEVKQPGSGGVKDNVRDEWAESQERR

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