Scaffold Ga0272482_10026921

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272482_10026921

Scaffold Ga0272482_10026921

Overview

Basic Information
Taxon OID	3300028578 Open in IMG/M
Scaffold ID	Ga0272482_10026921 Open in IMG/M
Source Dataset Name	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1463
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	42.9888	Long. (^o)	-108.3994	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058701	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272482_100269211	F058701	N/A	VLVALIALTLSACGGDVAGGGEHQQAKGRPLPKYGQASLPAGRYHTTEFEPSLSFRITGGDWRFEGPSGTLGDPEHPDYLFFQRVPEAEIAFFNLRKVEGIYKPTGQNRPIPEASGTLVPVPTPDELVGWFQHHPYLKTSKPEPVTVGGVKGVQFDVACANLQKKDTQVDIFGLSTGGTSQVFFLKQEHYIVLKDVKGVPVVINYSDLKDHFDKFVPVAEKVLQSVEWTGT

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