NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247828_10092238

Scaffold Ga0247828_10092238


Overview

Basic Information
Taxon OID3300028587 Open in IMG/M
Scaffold IDGa0247828_10092238 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1416
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069466Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0247828_100922382F069466N/AMLVAPALFLVDATPGAAEWSDIGRWFDGSQPFTVGVESSRFRVSNLGARPVISVDDANPGSTPYRIIDTDLRGSGVSLDLTLRWPTVTSTGASGFGTVEPYLSFGPMLVAAGSDGLRVSQAGSMSLGLSMGAGLSWRFAPNAALFGGYRFMQSGRDGMFPGGARSSDPDGIGHDVLYGISVRF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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