NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247818_10681592

Scaffold Ga0247818_10681592


Overview

Basic Information
Taxon OID3300028589 Open in IMG/M
Scaffold IDGa0247818_10681592 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002918Metagenome / Metatranscriptome521Y
F011951Metagenome / Metatranscriptome285Y
F031564Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0247818_106815921F031564N/AWRVMLLRHKGEILGTVEARDVAAAKAAAAVQFDLDEIQRNRIMVQELA
Ga0247818_106815923F011951AGGAMTGAQFEIRIDGTPRTYRDRKDYAMEAARFLKSKNPHSMVEVKDLHSGDVTAVAHRPE
Ga0247818_106815924F002918GGAGMALKLRPTGLGSGIDKDCPDYAVYCGEWGVGRIYQTRGGPDNLRWFWSLTVSGPMTRSDRVATLEPRRSFR
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