NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247820_10998763

Scaffold Ga0247820_10998763


Overview

Basic Information
Taxon OID3300028597 Open in IMG/M
Scaffold IDGa0247820_10998763 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017638Metagenome / Metatranscriptome239N
F034755Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0247820_109987631F017638N/ALGGGEPLRTAYAVAEPNQHRAVALFKLRPDHTADEQVEAVVELTQSALDSLGLKPGMIKP
Ga0247820_109987632F034755GGAVRNFLAYESDKEGAIELVRKRVPVNERELAEAVAEVSGHEFVGPGMRPGDVRRLGKKVDFDEG

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