NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265303_10927418

Scaffold Ga0265303_10927418


Overview

Basic Information
Taxon OID3300028600 Open in IMG/M
Scaffold IDGa0265303_10927418 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)719
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1817Long. (o)7.9018Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029401Metagenome / Metatranscriptome188N

Sequences

Protein IDFamilyRBSSequence
Ga0265303_109274183F029401GGCGGMTEAKVNDRTTFNISISYLIQIILAIAAFVYGYASISEHIERNDTEIKNLRSNQNNYIFPDIRLLEEKVIILEKEVLVLQKEIEFHKKEIQAIKNIQKND
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Institute for Fundamental Biomedical Research
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