NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265303_11498495

Scaffold Ga0265303_11498495


Overview

Basic Information
Taxon OID3300028600 Open in IMG/M
Scaffold IDGa0265303_11498495 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)563
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1817Long. (o)7.9018Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007038Metagenome / Metatranscriptome359Y

Sequences

Protein IDFamilyRBSSequence
Ga0265303_114984952F007038N/AGRSWYGISSEVEIDPSTNDFISGAFKLITPDEPRLTTAELAAAVAEFCGDVDELWAWIPTMERVAEFFDLGEEAGELYAKYWDFDLQMVRSLVQPWPDGWPNELLDLNAAAVDAKVELPPRAENHIHPRVHVEWNRELFNRIRAASVS
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