Scaffold Ga0247819_10096670

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247819_10096670

Scaffold Ga0247819_10096670

Overview

Basic Information
Taxon OID	3300028608 Open in IMG/M
Scaffold ID	Ga0247819_10096670 Open in IMG/M
Source Dataset Name	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1474
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.673	Long. (^o)	-77.032	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F049538	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247819_100966703	F006289	AGGAGG	VPLLDRLVETLRQLRSHHRRRLAFLNPPIERRRPRIQMEDYAARHSIDHTLDRKAELRRLAPSNPEAAARYHQLLTYELHGLRELVATLQTTAGGRDLHECLAESRTEIERLEIEVAWCACLPTMESATDA
Ga0247819_100966704	F049538	N/A	AEPPLPRRPGPSFMYTGFLFHLGESMRTLFLLLALLGLIGMGLGVLDVIRGAGGPHGVPFSFENYGGPGSMLAGLILLAGSLYLRSIWRERR

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