NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257142_1058632

Scaffold Ga0257142_1058632


Overview

Basic Information
Taxon OID3300028621 Open in IMG/M
Scaffold IDGa0257142_1058632 Open in IMG/M
Source Dataset NameMetatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_40m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054975Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0257142_10586321F054975N/ALITKKKFFLISEDELKKFHQYVFDGLSVFDDLDAKNLFHDVGSRQGQNDIRSWQLVCKYCPLNLRCEVLIEDTSKCQIFNKLTVRKYSLHAMEEIQFQRKRLQEIFDDMKKAGTCDNHCDICILCDNAGECVAEKAMRLLRESKIKDQSGTVCTA
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