NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302159_10001667

Scaffold Ga0302159_10001667


Overview

Basic Information
Taxon OID3300028646 Open in IMG/M
Scaffold IDGa0302159_10001667 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5029
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022542Metagenome / Metatranscriptome214Y
F044216Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0302159_100016678F044216N/AMDKYLCLRSLPVLALSLMFAGSGFGQNAPQKKTLVVNGRTTDAAVVQIDGHSYVDVDALARIMNAAVRVEPGRVILTVPAAEAGAKPERSTPGLSKDFAKASISQLAEMREWKAAIASVIRSGVAAGNWLGPVLHDHRARAEAALSQTSLAAKTESDQKALQLLKNELTNLGEWDSNTQATIHSLNAEQSVNPAATQNDPLLAKISECGNFLNGMLVDGEFADSPSCH
Ga0302159_100016679F022542GAGGMNKKEINSPKLTANFLFWVCGVGGVLVIGLLGHYIWRVF
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