NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272412_1319013

Scaffold Ga0272412_1319013


Overview

Basic Information
Taxon OID3300028647 Open in IMG/M
Scaffold IDGa0272412_1319013 Open in IMG/M
Source Dataset NameMetatranscriptome of activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)623
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Studying Microbial Cell-Cell Associations In A Wide Range Of Aquatic Ecosystems

Source Dataset Sampling Location
Location NameNetherlands: Nijmegen, Gelderland
CoordinatesLat. (o)51.82Long. (o)5.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026607Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0272412_13190131F026607AGGAGGMMKKFVTTTVALALALSASVALAGTYVTGPLPSEFGGGFIPSDPAILKNVQKASKEGAKLAASVEKCYSKGAANYSKNKPTGVSTCLNDPAKGVLPKFTAKINGIAAKAPGLPPCHNYVADGNLIAGLVKGFNPSVYCQSPSGAFVDGTASF
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