NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302166_10020156

Scaffold Ga0302166_10020156


Overview

Basic Information
Taxon OID3300028652 Open in IMG/M
Scaffold IDGa0302166_10020156 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1299
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046467Metagenome / Metatranscriptome151N
F065927Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0302166_100201562F046467GAGGVPSDPQRSLNEQQHGTKPNSAISIQVELRHTENVSDLRDPDRDPDHLLAPERLIELENAAEPARQRLSELPAPALELVQAWLLAELAVARERALEVADFEFAECVCEMEQRLCFPGSFMRDAQASLRIQAVLGARAQFRVIQGGR
Ga0302166_100201563F065927GAGGMDPKTRPVLKSIADRPHPSLQALDHFVTSGGMRVTYYALALDQVPVDFFADPDGAWSYELLSRAAGFASHSGVAIGALREQFNGHPEGAAVVTLDALTRPYVAIVECPIAYEYVEQTADSASSAA
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