NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265323_10001280

Scaffold Ga0265323_10001280


Overview

Basic Information
Taxon OID3300028653 Open in IMG/M
Scaffold IDGa0265323_10001280 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12568
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025048Metagenome203Y
F030458Metagenome185Y
F031889Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0265323_100012802F030458N/AMPFQAKLTRARFVLGPFTSEDMLTIGNVVVESIKDRLHKGLNVNDQPAKPLKPGRNGKKGYPDCKAARGLQPFRDWFWTGRTMRSLKVKQASENRCVIGFVDPNADRIAHVNNLRERAFGISFKDRLALTAVARGVLKAARVVRVAKAA
Ga0265323_100012805F031889AGGAGMYGNIPDEGIIIRVPNPPKAARVRLPATDEILRRLAQQKSIRRTIGRRKSQTEFVPNSDADLALFNQIRLDKDGPEFDEFEAGNAISKLTFCDVTDCERAGDEYRITLKTPFGDTTHTMKIPTQRDITVYRRTVVSATDLPHGQEELRYRIEPAIDLYDSVVSKIDGYAESYKTADVPPHHKSAVAVELVQAIDEMDPSLDPNS
Ga0265323_100012808F025048AGGAMLNPSAMVDAIVGVLQSIPELAAAMTVLDSTGAPTCRIGTFHYRLGVEHRLAEAIYKMPAPSMLLAWDGTQGGNFDGQTIWKHRFSLYFRMGNAIGLSEPMGYEELWWTVCNKPPTGSAAGIRYMELYPGLDIMDTPSVAHALDEDLQDRFVGTLVIPEIGDN
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