NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265323_10041611

Scaffold Ga0265323_10041611


Overview

Basic Information
Taxon OID3300028653 Open in IMG/M
Scaffold IDGa0265323_10041611 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1666
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F010139Metagenome / Metatranscriptome308Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0265323_100416111F070324AGGAGGMANISELLNGWGFGKQTAIGTANTLATIWRHTNLNTRPWAK
Ga0265323_100416112F010139GGAMDMADLIHMASPEGEVREVEATAEALSPLMSNGWIQVPAPVAAQKPVVVAEEAK
Ga0265323_100416113F002448GAGVINPKTILAEWVTALQALPNLVDALGGDGGRIQFYTENAIVFGQPTQNNIRLAILSMPPGSVMIAWQGTGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDVPAGSSLRMLHTPVDPNCEPMDFYLPSARRNTVVISQDGATFEYFEVPVRLIESYNP
Ga0265323_100416114F007212N/AMSDWPTIDAAANAAMQQTFGEPVVYQSAQAGLAVGDAVTIAAIRHARVREESGAPANIEEISVNPSDLANFPQRGDWVTAWGSEFVVTTVRQPDPYGMVELSLMARAGQSSSD
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