NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265323_10042573

Scaffold Ga0265323_10042573


Overview

Basic Information
Taxon OID3300028653 Open in IMG/M
Scaffold IDGa0265323_10042573 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1643
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F010139Metagenome / Metatranscriptome308Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0265323_100425732F007212N/AMSDWATIDAAANGAMQQTFGEPVVYQSAQAGVAVGDAVTIAAVRHARVRDESGALANVEEISVNPSDLANFPQRGDWVTAWGSEFVVTTVRQPDPYGMVELSLMARAGQSPSD
Ga0265323_100425733F002448GAGVINPKAILAEWVTALQALPNLVDALGGDGGRIQFYTENAIVFGQPTQNNIRLAILSMPPGSIMIAWQGTGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDVPAGSGLRMLHTPVDPNCEPMDFYLPSARRNTVVISADGATFEYFEVPVRLIESYNP
Ga0265323_100425734F010139GGAMEMADLIHMASPEGEVREVEATAEALSPLMSNGWIQVPAPVAAQKPVVVAEEAK
Ga0265323_100425735F070324AGGAGGMANISELLNGWGFGKQTAIGTANTLATIWRHTNLNTRPWAKVPVNE
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