NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265336_10000006

Scaffold Ga0265336_10000006


Overview

Basic Information
Taxon OID3300028666 Open in IMG/M
Scaffold IDGa0265336_10000006 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)348453
Total Scaffold Genes322 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)219 (68.01%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026918Metagenome / Metatranscriptome196N
F040711Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0265336_10000006221F026918N/AMDSKQLFIEHLAGELQAMEVGRVPMNALRYRVHAKMLRKALLGAPAPALLERQGGAHPQVVHALSNRFFEESGHLLQPNATAHKARSLLERTLASCRQARQK
Ga0265336_1000000657F040711N/AMPPESSRDRLASALGTDADQVLMERGFSLAFVGAQGQARLVQFRLSKKGFAADRAADDAAFAGFLDEFCACVERLLDERWGGIALRAAFDGEGELIARLYADGPLARCDAVDPASTGGPLVEPGEQVDARTLLMRASARPIENWGLFERAPPLDDGAFAHEQRCRALVAGRRA
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