NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265336_10000014

Scaffold Ga0265336_10000014


Overview

Basic Information
Taxon OID3300028666 Open in IMG/M
Scaffold IDGa0265336_10000014 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)241247
Total Scaffold Genes219 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)151 (68.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028856Metagenome / Metatranscriptome190Y
F035339Metagenome / Metatranscriptome172Y
F060114Metagenome / Metatranscriptome133Y
F062395Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0265336_100000142F062395N/AMKRIVASSHMHAETKASFRYEATWNVEGALLTWNATVSLPGRRWSLAGGTPEWTCGSEAAAVREDVARSIDGLVIC
Ga0265336_1000001443F060114N/AMTSPLTDLFEQQRIENARLSGQIVALEMAVKLLFIQHPNPNALAAFYSKAIDGLLDITLATRMPEEMRDALDQARNGILEALRQQPALG
Ga0265336_1000001456F028856GGAGGMDNFPAGHANDATIDHGAMLAIGAMFDMLHDDDNLGDEAPFPSTWLHLTSGDAPHD
Ga0265336_1000001466F035339GGAGLAAAPLTLAQLRRDRRLVWWWLPVGGAAMFLVVKAWQQVAGEPPPALYTTLDVVWIAVTFGLIWRRSSSRCPQCNHRWLRAFPWMSLKKVQCPVCGHEAK
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