NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302161_10117842

Scaffold Ga0302161_10117842


Overview

Basic Information
Taxon OID3300028674 Open in IMG/M
Scaffold IDGa0302161_10117842 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)675
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049125Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0302161_101178421F049125AGGAGGMGARKGRALLLVLTIFVLSAATELYPADKTSVEPSRDSIIRIVTQIQRADYEGDRATLKRLHDELTAIPEDNRLASRVLYWRGFALWRRAINGFNESPTPTDLEGDLTQAVTDFKDGIARDPAFVEPKIGAGSCLGYLMYLSKKDPKRVQELLQQSSPLLKEAMATAPDNPRLLWVLGPIRWSSPPE
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