NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272445_1004572

Scaffold Ga0272445_1004572


Overview

Basic Information
Taxon OID3300028675 Open in IMG/M
Scaffold IDGa0272445_1004572 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7702
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5775Long. (o)-110.7896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086364Metagenome111N
F104114Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272445_100457212F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPMTFAKFLESFEKFRDPDFPVYWIPWAIEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLQLVQQA
Ga0272445_10045727F104114AGGAGGMERLRLWRSMTQDEKFAAAEKAMKDAVVARYDEFADEWSLSRSVEDIAPGALAEIVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRNQVSLIKEVK
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