NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272445_1006834

Scaffold Ga0272445_1006834


Overview

Basic Information
Taxon OID3300028675 Open in IMG/M
Scaffold IDGa0272445_1006834 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5627
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5775Long. (o)-110.7896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023603Metagenome / Metatranscriptome209N
F024322Metagenome / Metatranscriptome206N
F038584Metagenome / Metatranscriptome165Y
F044249Metagenome / Metatranscriptome154N
F054062Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0272445_100683410F024322N/AVSLLRKLREARQWRYLRLIDPLLLRYEFCPVWANYLTPPSPVQVDTSVGVLTIQTGLVRSFAREYDVSTYSFPFSAEERVGFHPPPIFVAHYSEFSQIAARRQHAFMVVIPDGRMGKSEWGEVEYEAFFFAPAQDSEDFEVQLDRISGVRQSLLELWPKMVTFTEIIPKFSRRAEWATGEKLVKGEWIAIRLTINLKDYELNAV
Ga0272445_10068344F054062N/AMQKVRELRWKDFCDGLDKDQPDEIQKEAEHIFFDQLFPEVVLTFFQNVSEILLLYEAQLTAPAMKPIADAKYNELFKQHPIPFYESLVPVLKNLGAEPEKATFLEICAFLTTYRS
Ga0272445_10068345F023603N/AMLYTTADFTGQYRLDSNAITQADYQQAIDEHERTLLEYFFEPSSVEKIYAALPSSAPAVGVRAVMRDLALPFIFGRIKMGVGSSMAGEPNTQGYTRMGYTPHLAWRGSETLRRLLLFAPFVVLAELATPSATIPYPNPIPPAPDFVAIGDPVRAYTTMGEVQTTVVSVTGADITLAATLPAGPVKVIVENLRIRINRVYLTF
Ga0272445_10068347F038584N/AMTEEIKQIQKAAEELNAVLHATATSEEEQKTLDVISKAAAHIRQQLRERAPNASTRIKVNELKAARKLMQRYIRKTTVGANIPREYVGEAFYVTRRPVIEFIQDYLRAETLEVLAEITQVRLNSFTGSPSTVSEGEPKPTMGTMPQRVTSNYQKLAFTDLITDEAVLAYPNIVDFLIWHGAYQLEVLLHNTLISAIAAIASPATLPTGIPSPQIADLLIYMRAFHDQQAAIGPRGDWPANIAIVPFPYYWQLIFGGLKTTIGDYIKLDRQLQDLTLIAYGSEQTKPTIVLNENEMEVFYLGDITVNFGRVFDAASDTNVRRLSMDLFYAPMPHAGRPVSVANTQNAINSMA
Ga0272445_10068349F044249AGGMTKRDAILVLLGGALTIVAKKYAMVLAALIVLGSLANFLGWVYAFVSGEGIKAVKILQGTARLVFYIVFYLALLVALEQVASYLISPLLSVAIIYEASLALKKAVQLNIVPAGLVRQLAKVFHREPPEKAT
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