NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272445_1017090

Scaffold Ga0272445_1017090


Overview

Basic Information
Taxon OID3300028675 Open in IMG/M
Scaffold IDGa0272445_1017090 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2718
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5775Long. (o)-110.7896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0272445_10170902F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRAPDFPVYWIPWAIEEAVELLTDRNFGWHEDALKDEWSYTGEFSFICVDPETFKCLTAERSNGSCTVSVVFPILDIDDAVQVVEYFLRLVQQA
Ga0272445_10170903F069506GGAGGMQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWNDPDFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVSGTVIYYEDIIGLVIKLLNKIQPELVTE
Ga0272445_10170904F100012AGGAGGMDREKVLQALREAQAEYNIENLDEFIKKAWEEVDIVDAQIVAELTERAVEILLDQDFLWVHIIESEDCEEWIPDGWYSFVAVHPETHQCLTVIEDPVYSWESRASFSARIRSAEDAVDAVMSLAELIEQNLKSRAVE
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