NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307301_10081125

Scaffold Ga0307301_10081125


Overview

Basic Information
Taxon OID3300028719 Open in IMG/M
Scaffold IDGa0307301_10081125 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000938Metagenome827Y
F082301Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307301_100811252F000938AGGAGVARRTTWLIDMGDGTWAVSCMACRITLYRGPKAGAERAARSHYCEPVLPLGRRRRPA
Ga0307301_100811253F082301AGGAGMNPPIRWGQPPTGWGPPQQTGWTPLVDPGPRPLQAVRSIGRWLWPTLAVSGFLAVTGFVLSNDDPASGLHGRSLLTVALAAAVVVLLTLHRRYGPRPLARAVFEF

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