NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302301_1000033

Scaffold Ga0302301_1000033


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000033 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)173731
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (73.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003084Metagenome / Metatranscriptome508Y
F003629Metagenome / Metatranscriptome476Y
F005244Metagenome / Metatranscriptome407Y
F005823Metagenome / Metatranscriptome389Y
F009411Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_1000033136F005244N/AMSIFDEKYRVVGIERDRLMVRGVHSGEVLTIINPEPSFPLSQDDYPVGKLIALSDPSATLQN
Ga0302301_100003314F009411AGGAGMLNDDSRKQAGIARLASDLRSAKVELLSAQCAADRLRLQYSVEDIVSFGERQALMGAIASAGALCRFFSSLETQLKESERQK
Ga0302301_100003348F003084GGAGGMSGKQAVLAVLVVGMCILGPSAAAQDEKNELTGMLGRIFISDQGIHGPNAPSINPFVRSGKGLTFEIDYARHFAGTEIYGLSLEVPAVFNLDEDLGSGGDVVPSDYKQIFVTPALRVNLFPETKVSPWVSIGGGFAHFSESGNLNYYGANPGSSTSSGVLQAGLGLDVSPFGHRLRHFSIRGEVRDFWSGTPDLPLADTGKSRQHNYFVGGGMTWHFSK
Ga0302301_100003350F005823GAGGMRSLPSRSVSPSVTIRVAGSLSEGHLAYLDQLVSSAIECALWPLLDLAYLKEMDHDALRYLVAGEGRHFGIVSCPDLIREWMQLEKEGEAA
Ga0302301_100003394F003629AGAAGMKSNRLLNRRVVFKLHGMDPLDATILKQDETGYWIRGGTLAGQLDQSNCSLPESDVRYLEFSRIEWLRAPRQRAG
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