NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302301_1000064

Scaffold Ga0302301_1000064


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000064 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116391
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000323Metagenome / Metatranscriptome1300Y
F014644Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_100006445F000323GGAGGMKKLLCALLLSGSFLLAQTGAPAGTNPDNSKDPKGQVTLQGCVSRSSGDYILMKQDPAVTYELQGTHKIKLSQYLGQRVEVVGRESPSMSTSSDSSARAGSPSPVTLTVSSIRTIDKECSAH
Ga0302301_100006488F014644N/AMDKKQINDPKMTWNFLIWVGGVFMLSIFALLAHFVWRVF

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