NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302301_1000396

Scaffold Ga0302301_1000396


Overview

Basic Information
Taxon OID3300028731 Open in IMG/M
Scaffold IDGa0302301_1000396 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21406
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F000281Metagenome / Metatranscriptome1382Y
F006676Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0302301_100039614F006676GAGMEEGPDLKGKKAHQPFSWLPQIDQVLVVGMKYGPKGTHEAVKKVQQIAPELTPAQIWHRMRHLREKDRGKRTGPIDWSEEAIETLRDGYRSGGRKKAAAIKTVRALYPGLSGYAVSRFARSQGWLEGERGTKKNDSRRPWTREEEQELFVRAGYDSVKEIARKLRRSEQSVRFRLKGRSISARVTDGWSLRRLQQTLHLSYRRLQHLIGNGFLKVRDPRVSVISLAEWCEKHRATLQPGVEDKIAADLWKKENGHSWGRVAKLLGVTAAEVGRWVANGELKVVDPSMTDRAFEAFCRQHGAELNLQLMDPEVARWLIAEYGLEIVAPRLTSVPFSQKQALVVRLCPKCKRDIRGNVYFRHVRSCRGAMSQRGDGRLGVNHQAS
Ga0302301_100039616F000281N/AMQNPVKERIVKLREEIAQISEANRQYMGSGKKIPGSVGDHERRLQRLQEILDELVSLTDWKKL
Ga0302301_100039618F000065N/AMSHINKLTSKLRKAPQPPLSHAGATADADRAKKPPLAQPPAPDLELSPGDRVMGLADFGKPTGEFGTVEKTNEDDALVKWDDDGRTRQQQPSLKKV
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