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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028735 Open in IMG/M |
| Scaffold ID | Ga0272446_1000003 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-006-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 353765 |
| Total Scaffold Genes | 411 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 298 (72.51%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5772 | Long. (o) | -110.7892 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031713 | Metagenome | 182 | Y |
| F038776 | Metagenome / Metatranscriptome | 165 | Y |
| F040370 | Metagenome | 162 | Y |
| F042051 | Metagenome / Metatranscriptome | 159 | Y |
| F042607 | Metagenome | 158 | Y |
| F071164 | Metagenome | 122 | Y |
| F094469 | Metagenome | 106 | Y |
| F103138 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272446_1000003207 | F103138 | N/A | MQGTILLNYNENVKQVEEEEKTRFLRGLLEQMGVPIEEFWTTDTSLSIDQRIKLRSILATYGIQVIDDLDGHMQVYVDKELVGEWFKSTYKLKRDLRELDPKKQLYMEMTINFWTIFEQQET |
| Ga0272446_1000003243 | F040370 | GGA | MGTNNFSRDNLYSLHNFVQSSMIVYPKEIILSTLRDFFSHSDFYHYSKDQWGFPNTTDHTNMPPGADLPITAYGSTASINGLLSTRLFIGENYRHDGVYYPAILVKSGGSKYIPISINREKGAVQYEDIVFEDGYGNKTIVHNPAYFITAGVWEGQIAIDVITRSLRSRDDLVELVGLCFAEITVDSLYDIGIIVKPPSIGAPSEIDDRNDKLFRQTITLDIRTEWRREIPIGNIIDAIFFSASFEDLSNPNTPVSPNITINTEVNLLDMLLNL |
| Ga0272446_1000003295 | F094469 | GAG | MNKNALKKILEHPDKDEIISKLIIGISAKDIHDWLKAKYTNVSEMKFVIAEKSIKSFQSNYLDIYNMINADLAKSKSALATNTEEQLSLSIQNNPTYKNKMLELAGKELDIRQIVTNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPSEKDAPNTEVRLAEAKLLSETINKKINE |
| Ga0272446_1000003296 | F071164 | AGGTGG | MRISEMLTAIASWLESPDNEAILLAEYDEECLQIVANSCVQAAALLKITAEAVEDIEPPEESKITPESVEELANLATALDESGDPALQKQASVIDELLLTIASPPDAVAQRQDLLDKRLEEVKKKYEQPRKDLSEVNKIADSEKLIENSNMTKQMDILEAPLSSRYCPDHPGAQMARVGEHMWQCELDKKIYNFETGFTLNNGTKVPGGDVSNQTKAFDAPFYNIFDSREDRLRQ |
| Ga0272446_1000003299 | F038776 | AGGAG | MSKFAINYSDLEKAIYKKAYRLQDVQDRIERVAFDVVRFNDDDNGAKLWQIQSADDGDYIVSIYEPDPNEKIVNSWSVSINKISGDMQISYKGDPLVRLAYNKLGIPRSELSKVEQYLPQKLANNKKLVTSLLNELSESAKKEVLSKYPELG |
| Ga0272446_1000003305 | F042051 | AGGAG | MTTTFGEVSWNDDLYLGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYNKEGDTGFGQKVYCSMIHGSCPLCATGDKPKPRWLIGVISRKTGKYQILDISYAVFSQIRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSAADQKIKDTQVDLEDLKRRVTPPTPDMVQKRIDKINGLAVDAVGTTPYSKTEKTNKSVKVPPSPVSMSDDDDELFPAYDGDSVNAS |
| Ga0272446_1000003310 | F042607 | AGTAGG | MPLRVIDNKRVDLTYDEDQMYQKIVASYTSLTNKGEDLFIDLFETDDNGIIIFLKPPSRRQTSFEVFLFLMSVMQHQHLRIMHKKVDSLCAEVRDKLKDK |
| Ga0272446_1000003357 | F031713 | GGAGG | MSNNNLTIDLKARKDVDGQTFYVGKLKCPVMIDCSEGAVFLVFVSDKGDEQLQIATMDKKDDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |