NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302220_10023387

Scaffold Ga0302220_10023387


Overview

Basic Information
Taxon OID3300028742 Open in IMG/M
Scaffold IDGa0302220_10023387 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2899
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008760Metagenome / Metatranscriptome328Y
F020643Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0302220_100233872F008760GAGGMTGLLTVAYAGLVLLATQVFRFHTPAAVAASTLTAAVLFNLPRRRLQRAVNRRFHRLA
Ga0302220_100233873F020643GGCGGVKFLRHLAAVVLVVAVIVGLGMLWAHASGGTGIGRGPGRPPSREAYLRLEHIKEQIKVGVIRVRSDNGFNLADTGNLIRTCEIEAVLAAVVITVSVIRRRRRRTRRTAAAA

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