Basic Information | |
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Taxon OID | 3300028747 Open in IMG/M |
Scaffold ID | Ga0302219_10001876 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8555 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000696 | Metagenome / Metatranscriptome | 931 | Y |
F000739 | Metagenome / Metatranscriptome | 913 | Y |
F006125 | Metagenome / Metatranscriptome | 381 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0302219_100018761 | F000739 | GGA | MHMTHTEIWLRGALAAAISGAAGGLLTGFAAVGIDPQHFNLQAGLGATFHIGEAAALINAVIGVAAYLQKSPLPE |
Ga0302219_100018762 | F000696 | GAGG | MPVVGSSAYNTAGQITSLVRSLLNDAAGNLFTDTVLLPYANSAYRKVQRAIGNAGGGGFIQDDVLLVVTAVTQTDASLQVSITDATAPPNQLPTDLLVPVKIWERPNLSTDDFVEMVDLSQHGGLPSREQDLTLSVWEWRADGIYFLGATQDTEIRLRYFKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVVAAVRREQQSQRRRRPYSSRSGYTPF |
Ga0302219_100018763 | F006125 | AGGAGG | MAIQITLLPYNENGSGTNLYYAVGTLTFSGNYTTGGDTIDFTTVADKLPSTQIIQASAESQNGNAGYYVPVASTALNTWKLKCFTGGGAEISSGAYPSSVTTDVVQLTITARKLL |
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