NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302219_10002798

Scaffold Ga0302219_10002798


Overview

Basic Information
Taxon OID3300028747 Open in IMG/M
Scaffold IDGa0302219_10002798 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6920
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003669Metagenome / Metatranscriptome474Y
F012132Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0302219_100027986F012132GGAGGMPKIRMRHPYWHLALVAAIALAIPAAKAEQRDNPALDAGGNTACANLGVYIFVGGTGGFDGLKNGDRFTELLETGHVGLYEHANAVVAAEHPPSIIQAIESVFTGTGPGQAELGQVGANYFTLPPSYGYYQAEYIQNGLHPTEANVNTPSDSVPPKQLQEALETWREYVDAARTVGIETVAPVVGPNDPDEPKLGDHVFATNPYYALERGEALYGKAIAFDVPPNFFLTGGSGPGYQKFIVQAIQWGNEHGMRTTMLLSPYPWPTNAKGKADTFREFTNNTFSSDTQKIVSQLSQHQAIPSQWSVDNYEDPYPHDIPAVTPETVQNTTTAVGLWLAANAPVYVNTPRNQGVICTPPVSSDGSER
Ga0302219_100027988F003669N/AMCPFCLATVGIVVAGAVSTGGLAALAVKVSRKKNTAEEIVPNLNNKEK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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