NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307297_10000322

Scaffold Ga0307297_10000322


Overview

Basic Information
Taxon OID3300028754 Open in IMG/M
Scaffold IDGa0307297_10000322 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11515
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001245Metagenome / Metatranscriptome737Y
F002921Metagenome520Y
F016872Metagenome / Metatranscriptome244Y
F019060Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0307297_1000032212F002921AGGAGMATEKSSAPAHPSTEEHDDTVEAHYASLERPHACLEGLVFVGYVDEDGEEREASYRCRRCTDSR
Ga0307297_1000032217F001245AGAAGGMLKHMRRQILGKPAPYVEVRAAAINVGLDPGGSECRALVDELLRAGYLQRYPSPSLTAHGLYRLTDSGIVAADEAVLDEARRRRRLNGEEER
Ga0307297_1000032218F016872AGGAGGMPNDQTEQDATRLLGAFSTNHSEARMVSPHGTDRPFYPSWADAEQAGLNRVRRDTAIRWLVENNMLEREGEPESPLDTGEGFYSKYGLVFRITDAGRELLEETSERGQA
Ga0307297_1000032219F019060GGAGGMGEERQEQERTHKMAEDLILSKLQQIHAHLAAVEQMAASYPEDHSTRLLIESLELYKARTVVEDDIVRVRGSLGFGTHGYETL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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