NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272447_1000606

Scaffold Ga0272447_1000606


Overview

Basic Information
Taxon OID3300028761 Open in IMG/M
Scaffold IDGa0272447_1000606 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26015
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (88.24%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5761Long. (o)-110.7905Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007404Metagenome / Metatranscriptome351Y
F008499Metagenome / Metatranscriptome332Y
F010840Metagenome / Metatranscriptome298Y
F014738Metagenome / Metatranscriptome260Y
F016404Metagenome / Metatranscriptome247N
F018115Metagenome / Metatranscriptome236Y
F037517Metagenome / Metatranscriptome167Y
F074922Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0272447_10006061F005028AGGAGMRDDDLRAAMQFFAERLRGAEATEARLLRWTRRKLRSDAQAVAELMLAVGYRATYIRYFIRYHIPALREGAAIGETYIDPDATDAHLGLCWRLNEDVATVVSDLHAAAKRLQQPYRDLAAVCLRWGYVHETVVQLLAKTLERKPRNVVED
Ga0272447_100060610F014738GAGGMKIDIFLLISAFVLAFVHPDAAQVAATAVALLLVTRIERGRRARKTKRAPAGG
Ga0272447_100060611F007404AGGAGVDIVEIFQLLAAGHAGLTALDYLWNAVFGAIGAATAYLADTNGEVFLPRYDREQNSIELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPVLIDKITAFIERGRK
Ga0272447_100060614F037517GGAGGMRIRQIGTLVFDANTNIVVDANNQDAPGIGFRTNSLYDPQPFAVEIAFRRATRRQALDAVNTLARELYSYAQRRQDGRFAVAGGVLTVVEDAANGATLRSFLRDAAVTLLSVEAASTGVIARVRVTGTLINPFIDYTFTQNTLSSLLPYERRVVALSGLSDAYLYKSSLFYSVSNMPGLYNALLAIEELESATGTSRIIAINPTSVTSGIVLQNMPAPGLLRAYFLNTTNGIITYTVNPATFPHDVYRLFIEIFCPTTPPLNARYIVSWDGQPQIIETIVGDRSWYTPLLFTRSNTTFPLTLEIQNVPTGTAAMPLILIPTDGVFVWSVLTPPTLLSFHTLDLQSALSRPFETVPIGTVYGAPGFISSRYIAVFNGIMNVPMNGSSTLLIRSRRIEPAAFA
Ga0272447_100060617F004791AGGAGMTKPTEIYDIEAIRVDRSALTIREAATILNNELTAPVVARLVRKAIGAQADQFPLRALKAVYERVLPQIFEPDEAIRSRVAGLTPAVGEITLGEYHQFLDASERKIAFPEVAKTLLVKAYGEDILNEPYAAAALLLKKIFDSVGNEGNE
Ga0272447_100060618F005302AGGAGGMAHSGIVGSLYAGTFAVEITTDNTTWTAISNATVKIDDVELSRPSGEAYVGGSSDYATITVGKREPVEITITVLYNEDTGSAVNTMYNRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITSVTLSALDPSDAEPYVAMVTVRTPSLRQYTIAASNPTNLNPAS
Ga0272447_100060619F002970GGAGMLFSSVTDIIELLAGLAVQYNNAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVESGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVTQLRFAWLARGDVQLVNVSGIIDVIKYGERAYEGVAMTTRFTHLVRAPSV
Ga0272447_10006062F018115AGGAGMNNAEERFVRWYVQLPPDAPLDVYAARATLQRALSDREALAEYLLYECAPSLLGEFIFRHWNDALNDAPGSAALRLASAVMRALERVEDERDRRAAKWRFQLGLTPSARILRRLCEEINDAR
Ga0272447_100060624F005631GAGMRVSVSVDINNALRKLLPRAAQIEAALDAGAAAAHSVMQIYPSPPPGSRYRRTGNLRQKLRLRKLSKTSRIVENTASYARFVYGMPQARVHAGRWASVRDAAEAAKKEAIAVLRERGR
Ga0272447_100060627F016404N/AMTVDELLTDEARAAVLRALLMIVLSDEHPASARVAAARLFLSQFEERPNAERDVLVIVDETAFVKTV
Ga0272447_100060628F010840AGGAGGVNLPFSQPLDKITYGALAAAMVVILAWALREFAGIDLSAEVQSALALIIGYCVSYYVPLSETEAEAIARKYYKYK
Ga0272447_100060629F006418AGGAMRNKRRSATAPRPAREILVASGEDFRILFDRETRDFAVEYRGESVGWRSTESEARRLIEALRYEDARRCE
Ga0272447_10006063F008499GGAMKKSRSEPRWKRKEREAIKALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGLVGSDPGYVVEVKARKRMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLEELVGKERTNE
Ga0272447_100060630F074922AGGAMADAILAQFLEVALSLQTPVYAGVRATNGTLVASDGVMLVAYKLSAEYLRGEGMIPLATAKALAALVNEVYPEYIEVDGTAVRLVTKEQYADRSERLTVTFPPFACRTVRIESFLSRCTPPHATLVCEAPSLKLIKTARGNDFVELVDEPKRGDELFRLKSLDAKMWYNVKQLREGLRLFRPRDAVSVFRNDQGWLSFRDDWGRLFAVTPFVKCD
Ga0272447_100060631F002982GAGGMRLQFERLSGAICAVLTAPGECDRIVEVARASDAFGALALDVDPRAFKPLDALLTFARVVCVEIERRNSGWRVEVTYWSGTTGALAQYETEAASLIAALARAIRNTALPQRASESGARWR
Ga0272447_10006064F004307AGGAMFKELIHNGNGRERPELNGAYIGRFLGVSQRQRPTFETRNDPEPVYEDVFVFEFELSDPDLDEPVRVSKWVRKPPRLDHPAKNGKVSNLYKTIAALYGVAQMTDEQLNAAEDYVQNVAVGREYQLTLETKPSGWVEIVHIAPVRKARNRKKDEDEEVPF
Ga0272447_10006067F006252N/AVNITGAPEETTLRSFEEQAAYGLPYERLIAQTAALLLYPHRPDLTLVRLDVYASLDFLLLDGERPVAALEVKRRAVRSDAYRTTIIPQSVVDAAKRLTVPVFAAILFLDGLAVFDVLRTHSTARWLRDRRGTLRKHREYDIRERMVRLEEVHQPSR
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