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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028761 Open in IMG/M |
| Scaffold ID | Ga0272447_1000626 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25406 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5761 | Long. (o) | -110.7905 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013092 | Metagenome / Metatranscriptome | 274 | N |
| F022362 | Metagenome / Metatranscriptome | 214 | N |
| F056952 | Metagenome | 137 | N |
| F070715 | Metagenome / Metatranscriptome | 122 | N |
| F089597 | Metagenome | 109 | N |
| F096158 | Metagenome | 105 | N |
| F097406 | Metagenome / Metatranscriptome | 104 | N |
| F098168 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272447_100062611 | F070715 | GAGG | MRHRFTDDHGREYEVARISFARYHDLREHGFDLAKWASEALARVVKPDITSDNVQSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRESLARYGITANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEQASAQTLTPMSGTSSATSA |
| Ga0272447_100062612 | F097406 | N/A | MYESRLFHDHCHYGVIAAAIANAFRGSESSTIRVEDIFPDVVEYLERFGVRGDNELPLLTKDDLKSWLAHQKSERVARVSS |
| Ga0272447_100062621 | F098168 | AGGAGG | MRARFQSDLVRDRLRAIRAIAREVVLERRIVFVEARDGKLSFSTRSGIAVGEVRFDADGTKIVIEEEGAVALDANEFVSSIDRAAGEVVEIASGPDRDHIRFAATEYAFPKVAYSDHDRVSFSSSESSLSRFAFELEGIFARTVFASKSSVRSSSRFVLYRSGDDGLIVFSTDEKRYSIVRSRVDANVESKVLAYLDYDSAALAYSFLDATDERVEIGVDANGWLVLAGESFAVGLATLSVPNNGIRFLDFDRKFRDRVHRAATIPYESFARAYRSIDPVVSKEWRTIGFEFGESSVTLSATSDFGVAAKSRVDFESVVPANLRSTIYLDSKFVGDFLVAVRSVVSAEALESTKIVLEREESAKGIVFFGIESDDWRYGMMPISRD |
| Ga0272447_100062624 | F096158 | GGAG | MSQTKACSFVIESSRFAKLERALSVALPAAQSLGNDAGIFWLRDSIFAATPYASIGLANCGLEIEGVSGCIAISQFAARSLLFELRTWRVYYLERIFVAASYKLVFSFEYDRRSKISTPPLVSCYSGSWRPRMTPREHYERLLAHPISFECELSIREMTAKLRSNEEYGYVVLEGLSGVASHVAASRLLLLAFLEAAKNEDTTFLLAYYGDQRCIVCRAGDVIAIISVID |
| Ga0272447_100062628 | F089597 | AGGAGG | MPRKLSWNEVSECIDRESVARYGRYLRGVVEGETYVPKTTVTPSLVNRTIVLGVVYDWCRRHHRYRQLPVTVRAFSWCARFCYPFHPALTRLGIGSEDVVEALEWIANDSYSFRFAPTAYGGTTIVGEHRNGDRNEFHYFAPVQLVAPGIDGRREIPFDIRMAARLVMEAALRAICVAEDDGSYDDIAIRVTVRDLLEVAAPIVAPD |
| Ga0272447_100062629 | F056952 | GAG | MRRRIRYQLRDVFGNVVYSANDLRRIVKRLSQSLVKPTIYSAQGRRHVVFYLENGKIKCFVGNFGESRKSVEERVIRLFRASDIARRVRRHV |
| Ga0272447_10006266 | F013092 | GAG | MNAVLNDFFETLLRSRGVRLRLPNGTEIDAVVARRDSQSVSLGGQVAADTTTQCFVVRVSDLPAGYWPRVADEIVNVATAQRYVVVRAIGGAHATTSSDPYGFLVRVWTRLAS |
| Ga0272447_10006268 | F022362 | GGA | MIANLLDAVVDALNGPPQTASIAATRTWAHYWILARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARTYVDASSIETVVNDTYLIAARITGKEVLERDGIAYAFESISFSDPLYEIEEVFDESSFVRASVTARYAMLEPL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |