NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272447_1002537

Scaffold Ga0272447_1002537


Overview

Basic Information
Taxon OID3300028761 Open in IMG/M
Scaffold IDGa0272447_1002537 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9605
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5761Long. (o)-110.7905Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016816Metagenome / Metatranscriptome244Y
F050401Metagenome / Metatranscriptome145N
F070159Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0272447_10025371F016816GGAGGMLTVYNPYTGQWERLDDVVRPLPVIARDTRLVAVNDTTPFVPSFATTNSPSHTDIFGSTNALRANIGIVVGNTGADVVIPDAWRIRRVIVLANRTATGSTSVGIHCVVYARLLAPDGTPTSWRTLATTSEASPSSYVLRFALPASLAGVFGYDQYRIVFRRDTESDPAPQLSLIRVYAEF
Ga0272447_10025376F070159GGTGGMNTMKRIWRGLQKRIARAVIQYALEQLVISPELLHEIQRRTKLSAGVARIITEVVFDSIVRALNEALEKYDE
Ga0272447_10025378F050401GGAGGMKWFTRMFTLPKRYNSLSDIARDPFGALLNAAQWAVPLAMGLPGGFSALPKLLSNPALLAKWSLGNAPQFFGAKGAITTQSVMNWFKNPSNLALVAGGLSYLDQSRRARQASAQLDAFRQQLSGLGELERLFNTQLLNQRLNAVGTVLNPAFAIAQLRAMETDTANRARRMMDIAGVKSQRSVENALVRTAGDLARQRALIPLQYAQATLGIPLGMQYTPLLGSLLGQQRADELLALQQLIPALLQLYAYTRGITPTQTAGTTGG
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