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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028761 Open in IMG/M |
| Scaffold ID | Ga0272447_1003712 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6851 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5761 | Long. (o) | -110.7905 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029452 | Metagenome / Metatranscriptome | 188 | Y |
| F033055 | Metagenome / Metatranscriptome | 178 | Y |
| F036249 | Metagenome / Metatranscriptome | 170 | N |
| F050400 | Metagenome / Metatranscriptome | 145 | N |
| F050402 | Metagenome / Metatranscriptome | 145 | Y |
| F092114 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272447_10037121 | F050402 | N/A | MFSQLPTTRKGAIAERYVRDVLVGMGWHIYTYSADQPHPVDMIAITPDGRLVAVEVKCKCARIYYPDTGIDRNDYYAYHNLQSQLNLPVLLLFVDHYTRTVYGNYLDYLSQPITIVDNQRELVYPMIGEQYVYFPLQVMEHYADIPPAVVAQLNTRTYSKYHHSPPHTNDVDGDGV |
| Ga0272447_10037123 | F033055 | GGAG | MVYPNQVLENRNWTDSAGVGILLALGENDGIYIYNTSPVNELELGMPQEVVNCELRVQSDGMNPPLMMQFFLDGNFVDSIILPTTNNWVVHTLTVDRWDSVLLSVSVGGTVGVDFLRAVAADVSITRKTLTGVGI |
| Ga0272447_10037124 | F029452 | GGGGG | MIYEYRCIGCGWLTVAKRTVEQRDVAPRCERCGKLTQRVFPPRAQIVIPRAFQLECAREAAKLVLPSTPDEKRYWDTFGIMEDGDGE |
| Ga0272447_10037125 | F092114 | N/A | MRELVSITRHKMEQLLGDNPPKRDTWLLKCRRLREIVSNLPSNQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTVIDFGTDTQLYQMEFSNFLATNELALRDAILQRLVVGLGAVSVVGDTQNGWRLQSISPNDLWWDTTTGDVMQPKWIARAYRDSNGQEYREVWYADVYHRYPVGGADVETFHNPYGVIPIVLFPAHYIPDTVYPIGDVELACPQQFILDEIRRTFLNMARRGAGFFSVKQTSIDETELSRLQNPDEVYILVKEQDAIVPIPTPPPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPTGTAVPRALEDTITSANQLLQTEMVGNAPSGNISATQSV |
| Ga0272447_10037127 | F036249 | GGAG | MQFNPNTSHYASAVGAWLDNNFRDQFTITTAFLEKLKQRGAFKRGSAYLVQPVFGTGNPSVAGVSNFNAPMGIPADTGLSAVFTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSSVAQFGQVISNDLFSTTDATLGKIAGIPYAVDRPTTTANSYGGISRSNTVNPWWRAVVVDGGNQPLTLQRLADAYNRATENGGISPDIIVMPTAHFSAFESLLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTIFILNSRDIMLVSQTERPSAEPVEFPDRLVRGYKHGWAVALVAKRLNSNARINNITP |
| Ga0272447_10037128 | F050400 | GGGGG | VITVGIYNRHYQPVLERILEPARAVLLLTTDGVYTFTSITPAPLPHNYPITSAIANKHYALQIPTAPPYPSYRRAGKTIAVELCVDTAQSYTVQYQHNGTQQPPLTIQSLPQPNYPLYERTPIYPFAHNHLAGYLYDVRIVGRYQAGGMDIAIPSTHSGIITTVCIPLGDTTHLYSAYRNSSGEWKIIIRNPDGSELADETNVDTYLRVYVWSYYR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |