NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272447_1005251

Scaffold Ga0272447_1005251


Overview

Basic Information
Taxon OID3300028761 Open in IMG/M
Scaffold IDGa0272447_1005251 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5053
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5761Long. (o)-110.7905Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033339Metagenome / Metatranscriptome177N
F036130Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272447_10052513F036130AGGAGGMSEFPIFGSGEEYLRYMEQLVADIKEGRAEDPPYHAIFFAVRTEAEESLLYHRAEAARLGFAPERVVMLRDPASDAWVVLIPRDQDDAAFEELWGHGRDT
Ga0272447_10052515F033339AGGAGGVFRAKLTKLDVGVVVAAPSPRVRVLFDNRNHATQKVILYVGLPDKESAERLYSWLITNGCHHYDYATDTGVLKPRKAKRVDGMAWEIKIHRPTVELVKRFIAKDLAR
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