NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272447_1017969

Scaffold Ga0272447_1017969


Overview

Basic Information
Taxon OID3300028761 Open in IMG/M
Scaffold IDGa0272447_1017969 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1576
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5761Long. (o)-110.7905Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023603Metagenome / Metatranscriptome209N
F054062Metagenome / Metatranscriptome140N
F102264Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0272447_10179691F102264N/AMRFLDYLQVIIRLIRPERNRKGHRVLQDFYEYSLGRTADITEAPPPQTPLECLQRIADVRAIHTLIAGATARLTWKVTKRYNNTEIPDEFRSRALDRYAGHIVADYLVLGQAFFTENFTYVSPLEASLDTTLNIQRPNGTPLQSAFWLMRQFWELNRAETQILSLMGAAAFLYPKESNLPLTGDELDQLRKNLQDKVRKGGVGGIEPVSVPIELIPI
Ga0272447_10179692F054062N/AMNKLRELRWKHFCDGLATEPPDENQKEAEHIFFDQLFPEVVFTFFQNANEVLLLYEAALTAPAMKPIADAKFNELFKPHPIPFYESLVPTLKNLGAEPEKATFLEICAFLITYKS
Ga0272447_10179693F023603N/AMLYTTDDFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPASVEKIYAALPSSAPAVGVRNVLRDLALPFIFGRIKMGVGSSMAGEPNTQGYTRVGYTPYLAWRGSETLRRLMRFAPFVVQTELSAPEATISFTTPIPQAPDFVAVGDPVRAYTTTGEVQTTVVGITGTDITLGTSLPAGPVRVIVENLWI

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