NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307280_10000141

Scaffold Ga0307280_10000141


Overview

Basic Information
Taxon OID3300028768 Open in IMG/M
Scaffold IDGa0307280_10000141 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13010
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000336Metagenome / Metatranscriptome1274Y
F015542Metagenome / Metatranscriptome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0307280_100001412F015542N/AMQQAPGQQAPPPQQSASLDEIVVALVSVITAAIKSKYFMILSC
Ga0307280_100001415F000336N/AMPSGGKKKHKKPSGKKSELDSALDQIGDESAAAATKEFQDLLGQAKGDTSELVRQNAEDVEQRLVLLKKRKIDKDDFDYFIENQKLDLRAYVDGQPAQAQERAEKLTIQVLEIAAKVAIALI

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