NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302234_10067305

Scaffold Ga0302234_10067305


Overview

Basic Information
Taxon OID3300028773 Open in IMG/M
Scaffold IDGa0302234_10067305 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1598
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001323Metagenome / Metatranscriptome722Y
F024158Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0302234_100673052F024158GAGGVRDHDVTTLTAAELDRARRELAASLALARPGSPVRAPILARISAIDAELAVRGTPARPGAARA
Ga0302234_100673053F001323AGGAMPSTAASQQAPSVSPPKHPLPAMTTYELRDYRRDLETAIAFFDRQTPLPPDRDRLQATLNDLIAEQNDRKRLSGA

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