NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302225_10019929

Scaffold Ga0302225_10019929


Overview

Basic Information
Taxon OID3300028780 Open in IMG/M
Scaffold IDGa0302225_10019929 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3410
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031575Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0302225_100199293F031575GGAVTIFPSASAGLRRSLLQACVFALLVSASIAQQPTPVAPAAPEPTSTGTEQPLGTVVRNSKKPTSVRAKKVITEDDMDAIANVLPRLRMEGAENSDEIIAAIGQYKASHTPEETEAAVQAWFERYDQDLAAAIQQNQVVNSLREENFSNGYELCREGGDYQSCEKRRRAEYIGVRHDQLTIRRNAALEVRIQHVFMKVRGGIGRYGLHYDWFKVRTTNGIDTF
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Institute for Fundamental Biomedical Research
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