NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302225_10205958

Scaffold Ga0302225_10205958


Overview

Basic Information
Taxon OID3300028780 Open in IMG/M
Scaffold IDGa0302225_10205958 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)945
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015014Metagenome / Metatranscriptome258Y
F016839Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0302225_102059581F015014N/AMANCIRCGRQLPGLSFGKKICQWCVQHEAAQRGELPDDAPTPVMRTPWARSSDSTIGLTHIIFGINLAVFLGMVLSSST
Ga0302225_102059582F016839N/AMLSLIFTWLIVAWGILSCIYMLRCAWTRFPKRDADDVIPFLYPVDISLAESLLDPATDFEFRWNLRPRQFRDAQRKRMRLYLELTRRMAHNATVLVQYADAENNSCDPRRVGLASTLQQKAIEVRIYSLLTRIKLHLWLLLRSELLTSKPVLAHLRTAGDIDGLETYNALKIAAAAAFVELPPDELESLTRSL
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