NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302201_10021605

Scaffold Ga0302201_10021605


Overview

Basic Information
Taxon OID3300028785 Open in IMG/M
Scaffold IDGa0302201_10021605 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3629
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0302201_100216051F014350N/ADALKNQAEAPTKGSYLREKDGYDALSPEQKTACDKDFNSYLDRFTSPLEAMVGETRQDAILRAKTEYCAARQEHTAHHREIAKTMLASKINCLNDKYPRDSFSLLKPDVAKEFMATAFYHHAAASKELKSFDKDVFATCKKAALREFSVLSAGVETGAAGTKDFNNTFTINIERPPIGSLNQNLRIAVKPLPGKREELAAIFGKCAWYHSNQSGRTPEEREQRRAARAKTTQGLER
Ga0302201_100216052F004581AGGAGGMKQAEIYNGHAGRFHRMAEHIELSMTPQHQQRHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLDLSAGMIPGEERFQTVRGLFMMTAGCSEYDQTVKYTILPLPNREMETAKLFKAAAAYSLERAEVHSRNIPLPTRVAVQLER
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