NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307517_10058901

Scaffold Ga0307517_10058901


Overview

Basic Information
Taxon OID3300028786 Open in IMG/M
Scaffold IDGa0307517_10058901 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3689
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella confusa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)48.4473Long. (o)-122.323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001358Metagenome715Y
F002589Metagenome545Y

Sequences

Protein IDFamilyRBSSequence
Ga0307517_100589013F001358N/AVLDLSAKIYPRAFGLAATLEPRVIFIILIIILNLHDSSLSESGCNTEPKSLGCGSDCKVV
Ga0307517_100589014F002589N/AVLGLSAKLYPRVLGLAATPDLRVIFIILIITLNLNDPSLSGFECNTKSNSLGCRSGCKVV
Ga0307517_100589015F001358N/AVLGLYAKIYPKALGLAAMLDPRIIFIILIIILNLHDLSLNESDCNIGPKSIGCESGYKVV
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